International Gene Trap Consortium
Biological Pathways

GenMAPP 2 Data Index

Pathway MAPPs: View trapped genes in biological pathways
Last Update: 2008-08-15

In collaboration with GenMAPP.org, the IGTC has mapped public gene trap data from members of the International Gene Trap Consortium (IGTC) to sets of biological pathways and gene groupings. Users can browse the pathway diagrams and vi ew which genes within the pathway have been trapped. Genes with gene trap insertions are colore d on the pathway diagram depending upon the number of traps to the gene. Clicking on a gene of interest will bring up a backpage of annotation data and detailed information about the gene tra p cell lines.

GenMAPP.org is an academically based orgainzation that develops and supports GenMAPP (Gene MicroArray Pathway Profiler), a computer application designed to visualize gene expression data on maps representing pathways and sets of related genes.

Gene Database: Mm-Std_20070817.gdb

Expression Dataset: igtc_genmapp.gex

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Tutorial MAPPs

Tutorial-Pathway1.map
Tutorial-Pathway2.map

MAPPs

     Mm_Contributed_20051212

          cellular_process-GenMAPP

          Mm_Apoptosis.mapp
          Mm_Cell_Cycle_KEGG.mapp
          Mm_DNA_replication_Reactome.mapp
          Mm_Fas_Pathway_and_Stress_Induction_of_HSP_Regulation_Biocarta.mapp
          Mm_Focal_adhesion_KEGG.mapp
          Mm_G13_Signaling_Pathway.mapp
          Mm_G1_to_S_cell_cycle_Reactome.mapp
          Mm_G_Protein_Signaling.mapp
          Mm_HSP70_and_Apoptosis.mapp
          Mm_Insulin_Signaling.mapp
          Mm_Integrin-mediated_cell_adhesion_KEGG.mapp
          Mm_MAPK_Cascade.mapp
          Mm_MAPK_signaling_pathway_KEGG.mapp
          Mm_mRNA_processing_binding_Reactome.mapp
          Mm_Notch_signaling_KEGG.mapp
          Mm_Ovarian_Infertility_Genes.mapp
          Mm_p38_MAPK_signaling_pathway.mapp
          Mm_Regulation_of_Actin_Cytoskeleton_KEGG.mapp
          Mm_RNA_transcription_Reactome.mapp
          Mm_S1P_Signaling.mapp
          Mm_Signaling_of_Hepatocyte_Growth_Factor_Receptor_Biocarta.mapp
          Mm_TGF_Beta_Signaling_Pathway.mapp
          Mm_Translation_Factors.mapp
          Mm_Wnt_Signaling.mapp

          metabolic_process-GenMAPP

          Mm_Acetylcholine_Synthesis.mapp
          Mm_Alanine_and_aspartate_metabolism_KEGG.mapp
          Mm_Biogenic_Amine_Synthesis.mapp
          Mm_Cholesterol_Biosynthesis.mapp
          Mm_Eicosanoid_Synthesis.mapp
          Mm_Electron_Transport_Chain.mapp
          Mm_Fatty_Acid_Beta_Oxidation_1_BiGCaT.mapp
          Mm_Fatty_Acid_Beta_Oxidation_2_BiGCaT.mapp
          Mm_Fatty_Acid_Beta_Oxidation_3_BiGCaT.mapp
          Mm_Fatty_Acid_Beta_Oxidation_Meta_BiGCaT.mapp
          Mm_Fatty_Acid_Synthesis_BiGCaT.mapp
          Mm_Glucocorticoid_Mineralocorticoid_Metabolism.mapp
          Mm_Gluthation_Metabolism_KEGG.mapp
          Mm_Glycogen_Metabolism.mapp
          Mm_Glycolysis_and_Gluconeogenesis.mapp
          Mm_Heme_Biosynthesis.mapp
          Mm_Krebs-TCA_Cycle.mapp
          Mm_Mitochondrial_fatty_acid_betaoxidation.mapp
          Mm_Nuclear_receptors_in_lipid_metabolism_and_toxicity.mapp
          Mm_Nucleotide_Metabolism.mapp
          Mm_Pentose_Phosphate_Pathway.mapp
          Mm_Prostaglandin_synthesis_regulation.mapp
          Mm_Statin_Pathway_PharmGKB.mapp
          Mm_Steroid_Biosynthesis.mapp
          Mm_Synthesis_and_Degradation_of_Ketone_Bodies_KEGG.mapp
          Mm_Triacylglyceride_Synthesis_BiGCaT.mapp
          Mm_Tryptophane_Metabolism_KEGG.mapp
          Mm_Unsaturated_Fatty_Acid_Beta_Oxidation_BiGCaT.mapp
          Mm_Urea_cycle_and_metabolism_of_amino_groups_KEGG.mapp

          molecular_function-GenMAPP

          Mm_GPCRDB_Class_A_Rhodopsin-like.mapp
          Mm_GPCRDB_Class_B_Secretin-like.mapp
          Mm_GPCRDB_Class_C_Metabotropic_glutamate_pheromone.mapp
          Mm_GPCRDB_Other.mapp
          Mm_Matrix_Metalloproteinases.mapp
          Mm_Monoamine_GPCRs.mapp
          Mm_Nuclear_Receptors.mapp
          Mm_Nucleotide_GPCRs.mapp
          Mm_Peptide_GPCRs.mapp
          Mm_Ribosomal_Proteins.mapp
          Mm_Small_ligand_GPCRs.mapp

          physiological_process-GenMAPP

          Mm_ACE-Inhibitor_pathway_PharmGKB.mapp
          Mm_Adipogenesis.mapp
          Mm_Blood_Clotting_Cascade.mapp
          Mm_Calcium_regulation_in_cardiac_cells.mapp
          Mm_Circadian_Exercise.mapp
          Mm_Complement_Activation_Classical.mapp
          Mm_Complement_and_Coagulation_Cascades_KEGG.mapp
          Mm_Cytokines_and_Inflammatory_Response_Biocarta.mapp
          Mm_Hypertrophy_model.mapp
          Mm_Inflammatory_Response_Pathway.mapp
          Mm_Irinotecan_pathway_PharmGKB.mapp
          Mm_Oxidative_Stress.mapp
          Mm_Proteasome_Degradation.mapp
          Mm_Smooth_muscle_contraction.mapp
          Mm_Striated_muscle_contraction.mapp

     Mm_GO_Samples_20050810

          Biological_Process

          anion_transport.mapp
          cation_transport.mapp
          cell_adhesion.mapp
          cell_cycle.mapp
          cell_migration.mapp
          cell_motility.mapp
          cell-cell_adhesion.mapp
          cell-cell_signaling.mapp
          cellular_morphogenesis.mapp
          chromatin_assembly_or_disassembly.mapp
          chromosome_organization_and_biogenesis__sensu_Eukaryota_.mapp
          chromosome_organization_and_biogenesis.mapp
          coenzyme_metabolism.mapp
          cytoskeleton_organization_and_biogenesis.mapp
          development.mapp
          DNA_packaging.mapp
          DNA_repair.mapp
          embryonic_development.mapp
          endocytosis.mapp
          energy_derivation_by_oxidation_of_organic_compounds.mapp
          enzyme_linked_receptor_protein_signaling_pathway.mapp
          establishment_and_or_maintenance_of_chromatin_architecture.mapp
          gametogenesis.mapp
          growth.mapp
          immune_response.mapp
          inflammatory_response.mapp
          inorganic_anion_transport.mapp
          intracellular_protein_transport.mapp
          intracellular_signaling_cascade.mapp
          ion_transport.mapp
          lipid_biosynthesis.mapp
          locomotion.mapp
          locomotory_behavior.mapp
          M_phase.mapp
          metabolism.mapp
          metal_ion_transport.mapp
          mitotic_cell_cycle.mapp
          monovalent_inorganic_cation_transport.mapp
          negative_regulation_of_cellular_metabolism.mapp
          negative_regulation_of_metabolism.mapp
          negative_regulation_of_nucleobase,_nucleoside,_nucleotide_and_nucleic_acid_metabolism.mapp
          negative_regulation_of_transcription.mapp
          positive_regulation_of_metabolism.mapp
          potassium_ion_transport.mapp
          protein_biosynthesis.mapp
          protein_complex_assembly.mapp
          protein_folding.mapp
          protein_kinase_cascade.mapp
          protein_transport.mapp
          protein_ubiquitination.mapp
          regulation_of_apoptosis.mapp
          regulation_of_cell_cycle.mapp
          regulation_of_cell_proliferation.mapp
          regulation_of_transcription_from_RNA_polymerase_II_promoter.mapp
          reproduction.mapp
          response_to_abiotic_stimulus.mapp
          response_to_chemical_substance.mapp
          response_to_DNA_damage_stimulus.mapp
          response_to_endogenous_stimulus.mapp
          response_to_wounding.mapp
          RNA_processing.mapp
          sensory_perception_of_chemical_stimulus.mapp
          sensory_perception.mapp
          sexual_reproduction.mapp
          signal_transduction.mapp
          small_GTPase_mediated_signal_transduction.mapp
          synaptic_transmission.mapp
          transcription_from_RNA_polymerase_II_promoter.mapp
          translation.mapp
          transmission_of_nerve_impulse.mapp
          ubiquitin_cycle.mapp
          vesicle-mediated_transport.mapp

          Cellular_Component

          actin_cytoskeleton.mapp
          cell_fraction.mapp
          cell_junction.mapp
          chromatin.mapp
          cytoplasmic_membrane-bound_vesicle.mapp
          cytoplasmic_vesicle.mapp
          cytoskeleton.mapp
          cytosol.mapp
          endomembrane_system.mapp
          endoplasmic_reticulum.mapp
          extracellular_matrix__sensu_Metazoa_.mapp
          extracellular_matrix.mapp
          extracellular_region.mapp
          Golgi_apparatus.mapp
          integral_to_plasma_membrane.mapp
          intrinsic_to_plasma_membrane.mapp
          membrane_fraction.mapp
          microtubule_cytoskeleton.mapp
          mitochondrial_membrane.mapp
          nucleoplasm.mapp
          plasma_membrane.mapp
          ribosome.mapp
          transcription_factor_complex.mapp
          ubiquitin_ligase_complex.mapp

          Molecular_Function

          acid-amino_acid_ligase_activity.mapp
          actin_binding.mapp
          ATPase_activity,_coupled_to_transmembrane_movement_of_substances.mapp
          ATPase_activity,_coupled.mapp
          ATPase_activity.mapp
          carbohydrate_binding.mapp
          catalytic_activity.mapp
          cation_channel_activity.mapp
          chymotrypsin_activity.mapp
          cysteine-type_peptidase_activity.mapp
          cytokine_activity.mapp
          cytoskeletal_protein_binding.mapp
          electrochemical_potential-driven_transporter_activity.mapp
          electron_transporter_activity.mapp
          endopeptidase_inhibitor_activity.mapp
          enzyme_inhibitor_activity.mapp
          growth_factor_activity.mapp
          GTP_binding.mapp
          GTPase_regulator_activity.mapp
          guanyl_nucleotide_binding.mapp
          hormone_activity.mapp
          hydrolase_activity,_acting_on_acid_anhydrides,_catalyzing_transmembrane_movement_of_substances.mapp
          hydrolase_activity,_acting_on_acid_anhydrides,_in_phosphorus-containing_anhydrides.mapp
          isomerase_activity.mapp
          kinase_activity.mapp
          ligase_activity,_forming_carbon-nitrogen_bonds.mapp
          ligase_activity.mapp
          lipid_binding.mapp
          lyase_activity.mapp
          magnesium_ion_binding.mapp
          metallopeptidase_activity.mapp
          methyltransferase_activity.mapp
          molecular_function_unknown.mapp
          motor_activity.mapp
          nucleoside-triphosphatase_activity.mapp
          peptidase_activity.mapp
          phosphoprotein_phosphatase_activity.mapp
          phosphoric_ester_hydrolase_activity.mapp
          phosphoric_monoester_hydrolase_activity.mapp
          porter_activity.mapp
          potassium_channel_activity.mapp
          primary_active_transporter_activity.mapp
          protease_inhibitor_activity.mapp
          protein_transporter_activity.mapp
          protein-tyrosine_kinase_activity.mapp
          pyrophosphatase_activity.mapp
          RNA_binding.mapp
          serine-type_endopeptidase_activity.mapp
          signal_transducer_activity.mapp
          structural_constituent_of_ribosome.mapp
          structural_molecule_activity.mapp
          sugar_binding.mapp
          transferase_activity,_transferring_acyl_groups.mapp
          transferase_activity,_transferring_hexosyl_groups.mapp
          transferase_activity,_transferring_one-carbon_groups.mapp
          transporter_activity.mapp
          trypsin_activity.mapp
          ubiquitin-protein_ligase_activity.mapp
          voltage-gated_ion_channel_activity.mapp

     Mm_Tissue-specific_20050711

     Mm_1-Tissue-Blood_and_Lymph.mapp
     Mm_1-Tissue-Endocrine_and_CNS.mapp
     Mm_1-Tissue-Internal_Organs.mapp
     Mm_1-Tissue-Muscle_Fat_and_Connective.mapp
     Mm_2-Tissues-Blood_and_Lymph.mapp
     Mm_2-Tissues-Endocrine_and_CNS.mapp
     Mm_2-Tissues-Internal_Organs.mapp
     Mm_2-Tissues-Muscle_Fat_Bone_and_Connective.mapp
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